CysDBase: Database Collection Of Cysteine Post-Translational Modifications

Publications

Publications

Devarakonda Himaja & Bandyopadhyay, Debashree. (2024). CysDuF database: annotation and characterization of Cysteine post-translational modifications on Domain of Unknown Function (DUF) proteins based on biochemical pathways, diseases, taxonomy, and protein microenvironments. Preprint available: 10.22541/au.173196394.49091088/v1

Nallapareddy, V., Bogam, S., Devarakonda, H., Paliwal, S., & Bandyopadhyay, D. (2021). DeepCys: Structure-based multiple cysteine function prediction method trained on deep neural network: Case study on domains of unknown functions belonging to COX2 domains. Proteins: Structure, Function and Bioinformatics, January, 1_17. https://doi.org/10.1002/prot.26056

Bhatnagar, A., & Bandyopadhyay, D. (2018). Characterization of cysteine thiol modifications based on protein microenvironments and local secondary structures. Proteins: Structure, Function and Bioinformatics, 86(2), 192–209. https://doi.org/10.1002/prot.25424

Bhatnagar, A., Apostol, M. I., & Bandyopadhyay, D. (2016). Amino acid function relates to its embedded protein microenvironment: A study on disulfide-bridged cystine. Proteins: Structure, Function and Bioinformatics, 84(11), 1576–1589. https://doi.org/10.1002/prot.25101

Bandyopadhyay, D., & Mehler, E. L. (2008). Quantitative expression of protein heterogeneity: Response of amino acid side chains to their local environment. Proteins: Structure, Function and Genetics, 72(2), 646–659. https://doi.org/10.1002/prot.21958